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A Natural Mechanism Can Turbocharge Viral Evolution
… The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” … sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and is the head of the Viral Genomics group at the JGI, thinks that if you’re a virus or …
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … created a set of guide RNAs that were effective against 94 percent of the genes in a lipid-prolific yeast. The Impact … of Science User Facility. Y. lipolytica is a tantalizing microbial factory, capable of turning abundant biomass …
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Ian Blaby
… analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral … Wales, Cardiff, Genetics Ph.D. – University of Cambridge., Microbial molecular biology Post-doctoral positions  – …
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Statement on the Use of Genomics Data
… Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting data … upon the principles for open access in the field of genomics established in  Bermuda (1996-1997) and reinforced … or the publication date, whichever comes first. For nearly 40 years, the International Nucleotide Sequence Database …
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting! The JGI convenes …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … Francis Martin will be a keynote speaker at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting, to be held in …
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From Competition to Cooperation
… will assist researchers in moving toward functional genomics studies to learn more about the inner workings of … DE-AC02-05CH11231 within the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of … # 570) and the 1000 Fungal Genome projects (CSP # 662 & 1974). This research was also supported by the Laboratory of …
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Rex Malmstrom
… Applications group to operate a similar single-cell genomics pipeline that provides JGI users access to the … His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional activities of specific microbial groups within complex communities.  The Microscale …
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Complete Genome Sequence of the Opitutaceae Bacterium Strain TAV5, a Potential Facultative Methylotroph of the Wood-Feeding Termite Reticulitermes flavipes
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Graduate Students Get Thesis Research Opportunity at the JGI
… is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s … to an exceptional caliber of scientists.” For her project, “Microbial Community Structure and Methane Production in … the next generation workforce.  Since its inception in 2014, more than 20 UC Merced students have contributed to the …
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JGI@25: Solving the Mystery of the Missing Oil
… Berkeley Lab. Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in several Lab … also helped track and characterize the shifting waves of microbial communities involved in removing different …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… Tringe , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science … Student Research (SCGSR) program . Her research project, “Microbial Community Structure and Methane Production in … Kaze was part of the  2018 cohort of the JGI-UC Merced Genomics Internship Program, and is part of  Mark Sistrom’s …
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