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Supercharging SIP in the Fungal Hyphosphere
… automated aspects of a commonly-used process for studying microbial communities, with results published in the  … most widespread type of mycorrhizal fungi, live within a plant’s root system. They form mutually beneficial … over 80% of land plants, which means they offer a lot of insights into how plant materials can be broken down for …
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Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways
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Freshwater carbon and nutrient cycles revealed through reconstructed population genomes
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Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism
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Spatially structured bacterial interactions alter algal carbon flow to bacteria
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Boosting Small Molecule Production in Super “Soup”
… would be transformative at industrial scales. “Cell-free systems have been really powerful at finding ways to … “But this has been done most commonly in bacterial-based systems, and so one of the things that I think is so special … CRISPR-Cas9 that enhanced their ability to redirect the carbon in the cells toward particular pathways. In this …
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DOE Metrics
… Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on … improving the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one …
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Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The … and analysis, the researchers identified other bacteria and microbial processes that support PCE biodegradation. The … of contamination. By 2020, the water was at contamination levels that are below the minimum amount of what’s allowed …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… environments of extremes, where both temperatures and pH levels vary wildly from spring to spring. These biodiversity … a complex pattern of evolution for genes related to eating plant compounds in both the oceanic and hot spring  … Studying their diverse metabolic capabilities offer insights into how microbial processes might be harnessed for …
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Open Frameworks Training the Next Generation of Scientists
… (JGI), a DOE Office of Science User Facility, and the DOE Systems Biology Knowledgebase (KBase). The JGI and KBase are … developmental support from KBase (The Department of Energy Systems Biology Knowledgebase). Myco-Ed is supported by the … Science Foundation Integrative Organismal Systems - Plant Biotic Interactions 2029168 award. This material is …
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How Microbes Can Protect Plants in Drier Straits
… Science Program, to use microbiome science to help make plants more resilient to drought. …
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