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Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates
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Jeremy Schmutz
Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford … human chromosomes 5, 16, and 19. Following the completion of the human genome project in 2003, he developed … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
On July 30, UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was … despite the challenges of remote work. In addition to the knowledge gained on the job, interns had the opportunity to …
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DOE JGI Interns Share Their Summer Experiences
This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching … Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with Matt Blow; Sean …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
New 5-year strategic plan outlines how the JGI will advance the … for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … and the global research community will bridge fundamental knowledge gaps to advance biotechnology and …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into … gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) …
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a … an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase. Nucleic Acids Res. 48: D422-D430 Wang G et … World Bio Markets Bio-based Business Person of the Year Publications Committee Chair (2016- ), Society for …
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Learning to Look
Machine learning approach significantly expands inovirus … “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a …
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Data Ecosystem
To expand access to integrated data, improve tools and … cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … Research Scientific Computing Center … DOE System Biology Knowledgebase … National Microbiome Data Collaborative …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Triggering Morel Fruiting
A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … roots as well. This might be one of the key physiological factors that trigger forest mushrooms with diverse trophic …
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