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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … whose signal would have been filtered out as noise using more traditional methods. Thus far 25 terabases of …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior … techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress … the evolutionary and practical significance of plant pan-genomes including understanding polyploid genome evolution …
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Targeted diversity generation by intraterrestrial archaea and archaeal viruses
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics
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Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
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Aspects of the Neurospora crassa Sulfur Starvation Response Are Revealed by Transcriptional Profiling and DNA Affinity Purification Sequencing
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DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus
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A novel regulator of the fungal phosphate starvation response revealed by transcriptional profiling and DNA affinity purification sequencing.
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , researchers have … and soil from the Angelo Coast Range Reserve in California. Using DAS Tool on data from soil samples, researchers were …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … But for them to be able to pull that water through the whole plant system, they need to open these pores in their … all sorts of other intermediate phenotypes where plants are using a little bit of both of the pathways.  ALISON: …
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A restricted spectrum of NRAS mutations causes Noonan syndrome
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