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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by researchers at the Max Planck Institute (MPI) for Marine Microbiology has developed, … traditional shotgun metagenomics approach to learning more about environmental samples starts with researchers first …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … described a novel technique to access high-quality genomic information using minute quantities of DNA derived from … biology, a team studying microbial populations in oxygen minimum zones identified SAR11 bacteria as initiators of …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s … (and at one time, the spouse of Lynn Margulis). The information was then used to predict the metabolic … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… which microbes are present in a sample, to generate data about which organisms are active, and which microbes are … methane and organic matter.  However, to get all of the information that SIP offers, researchers must take on a … around the world, the team have now published a  Minimum Information for any Stable Isotope Probing Sequence …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … will strengthen future virus-host predictions. This information could open the door to improving crop yields and …
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SPRUCE-ing Up Science
… of biology and computer science, to reveal clues about how microbial and bacteria communities influence the … serve their quests related to processing RNA-sequencing information. According to Lawrence, this summer project … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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First Monoploid Reference Sequence of Sugarcane
… genome serves as a reference for the highly complex sugarcane genome . The Science Most species are diploids and have … focused on the gene rich part of the genome by harnessing information from a sequenced related species – sorghum. The … sequence and the overlapping segments used to define a minimum tiling path of sequences in a single contiguous …
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Global overview and major challenges of host prediction methods for uncultivated phages
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Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging
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Viruses control dominant bacteria colonizing the terrestrial deep biosphere after hydraulic fracturing
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Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
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