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How to Target a Microbial Needle within a Community Haystack
… and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk community sequencing … of HCR-FISH+FACS for selectively enriching low abundance microbial groups from complex natural communities. This type …
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Bright luminescence of Vibrio fischeri aconitase mutants reveals a connection between citrate and the Gac/Csr regulatory system
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Self-Buffering system for Cost-Effective production of lactic acid from glucose and xylose using Acid-Tolerant Issatchenkia orientalis
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JGI on the 2020 Highly Cited Researchers List
… that led to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples around the … Science Program, and already available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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GenomeVISTA—an integrated software package for whole-genome alignment and visualization
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An Integrated Computer-Aided Design and Manufacturing Workflow for Synthetic Biology
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Integrative analysis of multimodal mass spectrometry data in MZmine 3
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Steven Wilson
… Since 2018, Mr. Wilson has served as the Systems Engineering Group lead.   The group is responsible … automated sequence quality control and automation of microbial/metagenomic assemblies, portals that make data … Manager for the planning and implementation of JGI’s Integrated Tracking System (ITS) and served as the Shared …
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You Can Move, But You Can’t Hide
… in soils and water. MGEs like viruses and plasmids drive microbial processes and evolution. This is because MGEs can … The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the first version of …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… available metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Building Sphagnum Genomic Resources
… a number of resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different … of Vienna  reported recovering draft metagenome-assembled genomes for seven novel species of Acidobacteria through an …
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SPRUCE-ing Up Science
… of biology and computer science, to reveal clues about how microbial and bacteria communities influence the … “This makes it one of the most efficient carbon-sucking ecosystems on the planet,” Lawrence said. For Lawrence, this … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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