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A Plant Root Atlas for Tracking Developmental Trajectories
… a foundation for still larger efforts in diverse plant species beyond models,” he said. Cole annotated cell types … Lab  Biosciences Area has been leading efforts in developing and applying plant single-cell capabilities for DOE … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
Lead at the JGI.  To understand the microbiome systems underpinning a broad range of environmental challenges, … aspect of viruses in the environment — their sheer genetic diversity. As pioneers of this field, the JGI has leveraged … Camargo developed a new pipeline for identifying viruses across many thousands of genomes and metagenomes, called …
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The JGI announces 2024 awardees for our Community Science Program annual call
… left to right: [above] Olivia Ahern, Adriana Corales, Hugh Cross, Megan DeMarche, Joanne Emerson, Matthew Hudson, Megan … as smaller-scale calls including our New Investigator and Functional Genomics calls, here on our website . See below …
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Products
… transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by … Used for the identification of active groups of organisms within a community. Individual samples are fractionated …
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Eelgrass Proves to Be Much Younger Than We Thought
… key colonization events in the Atlantic ocean occurring within the last 40,000 years. The Impact Eelgrass represents … Summary Eelgrass is unique in that there are not many species able to occupy the regions where eelgrass … started roughly 250,000 years ago, when eelgrass traveled across the ocean current from Japan to colonize the southern …
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The More the Merrier: Making the Case for Plant Pan-genomes
… in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are still extant (whereas … after polyploidization,” said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author … B. hybridum types don’t interbreed. “Preliminary artificial crossing experiments between ancestral and recent  B. …
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Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas
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Diversity and function of methyl-coenzyme M reductase-encoding archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments
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A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules
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A Horizontal Gene Transfer Event Defines Two Distinct Groups within Burkholderia pseudomallei That Have Dissimilar Geographic Distributions▿ †
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The F-box protein gene exo-1 is a target for reverse engineering enzyme hypersecretion in filamentous fungi
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Identification of a Novel Nematotoxic Protein by Challenging the Model Mushroom Coprinopsis cinerea with a Fungivorous Nematode
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