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Microbial Genomics & Metagenomics (MGM) Workshop
… (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This highly hands-on …
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Nikos Kyrpides
… microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial … the genome analysis and Bioinformatics core at Integrated Genomics Inc. in Chicago, IL. He did his postdoctoral … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven … path of being a researcher in a national laboratory. In the future, I plan to pursue this path and hopefully will be … to adapt my existing skill set to a new scale, which presented a host of interesting and ultimately rewarding …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… pieces of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer … non-engineered strains. Their work puts into practice ideas presented in a  Trends in Biotechnology  review piece by … as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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Annual Genomics of Energy & Environment Meeting
… us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting! The JGI convenes …
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Emiley Eloe-Fadrosh
… pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging … at Scripps Institution of Oceanography. She stepped into the Metagenome Program Lead position in 2017. She also … analysis strategy for stable isotope probing metagenomics. mSystems . 8(4):e0128022. Kelliher JM, et al. …
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From Competition to Cooperation
… To learn why, researchers analyzed 135 fungal genomes representing major fungal families, including those for which … species, such as nutrient transporters, were co-opted into symbiotic functions. Recently published in  Nature … will assist researchers in moving toward functional genomics studies to learn more about the inner workings of …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated … have used culture-independent approaches to gain insight into the  genomes of giant viruses. In a new review, … viruses or single host cells harboring them — could be a future option to discovering giant viruses. Further, …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A … Analysis of the genome sequence also provides insights into how the multiple chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene expression as it grows back …
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How to Submit Sequencing Samples
… Sample metadata is collected via spreadsheet or entered into a web interface prior to shipping samples to the JGI. … automated email once the samples are received and checked into our freezer.  Your project manager will keep you updated as your samples move through QC and into the library and sequencing pipelines.  You will receive …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… genetically modified yeast to efficiently convert elements present in urine to create hydroxyapatite, a high-value … Researchers create method for converting urine into high-value bio-implant material …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His … of community-building efforts in the field of viral ecogenomics. For this role, Dr. Roux can rely on more than 10 … years of expertise in the fields of virus ecology and virus genomics, where he has engaged in collaborative, …
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