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Identifying the Microbial Cleanup Crew at a Superfund Site
PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … bioremediate toxic substances has led to the development of cost-effective environmental cleanup strategies. Summary … team has since identified  Dehalogenimonas etheniformans as one of the strains involved in breaking down PCE at the NRAP …
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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … into multiple interconnected layers. The architecture of these algorithms, inspired by communication networks … sequences. Sevim is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant representatives of deep subsurface ecosystems. A team of researchers … to eight separate groups of viruses. To visualize one particular viral genome in action, they utilized a …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … it to usable organic compounds. However, no microbe works alone. Archaea, bacteria, and viruses all operate in concert … genomes. One of these systems, the CRISPR-Cas9 system, is a powerful tool in gene editing, but many other systems exist. …
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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … by an international consortium. With the genetic code of sugarcane, researchers were able to map the location of … accounts for 80% of sugar production worldwide, but has one of the most complex genetic blueprints. Assembling a …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … surface where algae grow. Armed with a better understanding of the alga’s stress resistance and ability to adapt to … there.  A  Communications Biology article highlights how one microalga collected from water on the ice surface …
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10 From JGI on the 2019 Highly Cited Researchers List
Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited Researchers , which includes 10 affiliated … Highly Cited science and social science researchers in one or more of 21 fields appear on the 2019 list. …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and … a whole heap of microbes, each potentially contributing to powerful biomass processing. “So if you peer inside a poop … they have also snowballed into more collaborations. One of O’Malley’s former postdocs, Kevin Solomon — now an …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … to help researchers assess and improve the quality of metagenome-assembled viral genomes . The Impact The … contiguous sequences (contigs) of proviruses flanked on one or both sides by genes from the host organism. With the …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley National Laboratory … of the University of Duisburg-Essen, the Research Center One Health Ruhr (OHR), and the DOE Joint Genome Institute … methods in conjunction with microfluidics into a powerful tool to address many of the research questions …
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Matt Blow
… function in bacteria. Since 2016, he has been the lead of the User Support Analysis group. The group performs … analysis and develops automated pipelines for analysis of resequencing, transcriptome, epigenome and other … Nottingham University, UK PhD in Genomics, University of Cambridge, UK Postdoctoral training Wellcome Trust Sanger …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of … on various CSP and FICUS collaborative science proposals. One of his interests as a UEC member is increasing user …
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