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Drought shifts sorghum root metabolite and microbiome profiles and enriches for pipecolic acid
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Eelgrass Proves to Be Much Younger Than We Thought
… about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the … its history. Their research, published in  August 2023 in  Nature Plants , was able to assess absolute time … many species able to occupy the regions where eelgrass flourishes. The plant can thrive in both frigid and tropical …
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Understanding Wildfire Recovery, Starting in Soil
… at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the … work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed under the … for User Science (FICUS) initiative and used resources at the Environmental Molecular Sciences Laboratory …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is … that were acquired through it were usually only around 30% complete.  Described in  ISME Communications , a method … key to better understanding all the organisms that live in our immediate microbiome. The U.S. Department of Energy …
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Getting back to the grass roots: harnessing specialized metabolites for improved crop stress resilience
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Root-associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum
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Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites
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Plant-Microbial Interactions Group
… fungal expression patterns in root cross-sections. … 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z 10.1038/s41477-024-01666-3 … 10.1016/j.celrep.2019.04.054 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI …
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Enlarging Windows into Understanding Gene Functions
… of the alphabet. Yet the specific sequence of these four letters represents an organism’s genetic code, or … encoded in the genome sequence is part of the integrative science mission of the U.S. Department of Energy (DOE) Joint … and multicellular development. “DAP-Seq is the main source of information in the project,” Nagy added. “Since the …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas psychrophila can … summer sea ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, … recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae showed significant …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually … JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in professional … genomics and to help foster a diverse future workforce in science. To learn more about each intern’s experience during …
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Making a Lichen Together
… and alga to understand their partnership more clearly. The Science The humble lichen is a superorganism: one being that … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI … by a DOE-Biological Environmental Research grant No FWP 61327 to FRC and PL (for RNAseq). The work at the Joint Genome …
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