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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… the area in summer 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal waters and … (CICESE) in her first microbial ecology paper in the journal PLoS One . “Puerto Nuevo is, historically, a fishing … a strong role in my career interests post-Ph.D. in the sciences. “ Ul-Hasan was one of two UC Merced graduate …
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How Maize Makes An Antibiotic Cocktail
… it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays ) produces a plethora of … buck. The research team reports that transferring just four genes encoding these enzymes to another plant, such as  … in  Nature Plants that the zealexin pathway has an “hourglass” shape with diverse precursors in, and many …
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese relative …
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Calculating the Costs of Multiple Switchgrass Gene Copies
Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate … evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic diversity across the natural range of switchgrass found that …
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Diverse ecophysiological adaptations of subsurface Thaumarchaeota in floodplain sediments revealed through genome-resolved metagenomics
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Rex Malmstrom
His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional … in metabolically active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a … unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing the active fraction of …
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How to Target a Microbial Needle within a Community Haystack
… microbes from complex environmental samples. The Science A team led by researchers at the Max Planck … of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and Environment (INRAE). Remarkable Similarity Despite Vast Diversity For this study, researchers collected soil samples …
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Building Sphagnum Genomic Resources
… insights on their potential carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused … In addition, this work reflects a collaboration between two programs within different Divisions of the Office of …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for the global research … and stimulate a bioeconomy, where renewable, biological resources drive processes, products, and services.  Advancing … for bioproducts to support the bioeconomy. Functional diversity theme. Reading the genomes of individual organisms …
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Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice‐covered Lakes
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