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Viruses Reprogram Cells into Different Virocells
… infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … In  their study , which appeared in  The ISME Journal , they focused on how virus-infected microbes are … RNA sequencing was done by the JGI, and proteomics and metabolomics analysis and microscopy at EMSL. The team …
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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Rapid whole-genome mutational profiling using next-generation sequencing technologies
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IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
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IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
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UC Merced Interns Reflect on Their JGI Summer Projects
Over the course of eight weeks this past summer, 10 students from UC … due to COVID-19 restrictions, but virtual events and technology enabled a fruitful experience for mentors and … genomics, and to help foster a diverse future workforce in science. Since the program’s inception, more than 30 …
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Metabolomics of sorghum roots during nitrogen stress reveals compromised metabolic capacity for salicylic acid biosynthesis
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Uncovering the dominant role of root metabolism in shaping rhizosphere metabolome under drought in tropical rainforest plants
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … goal of producing sustainable fuels from alternative sources. Moreover, the team says the approach they used to …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a … of their well-designed sampling and analysis of their data at the time. Following the publication of their paper … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the …
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Identifying genomic data use with the Data Citation Explorer
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A Natural Mechanism Can Turbocharge Viral Evolution
… allows microbes to adapt to changing environments. The Science The first step in the deadly dance between a virus … has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are not only … under contract no. DE-AC02-05CH11231. This research used resources of the National Energy Research Scientific Computing …
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