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Altered Expression of Two Small Secreted Proteins (ssp4 and ssp6) Affects the Degradation of a Natural Lignocellulosic Substrate by Pleurotus ostreatus
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s … much less those considered large and giant. In a recent study  published in the journal  Nature , a team led by … noted study senior author  Tanja Woyke , who heads JGI’s  Microbial Program . The team mined more than 8,500 publicly …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health … do on the leaf surface. More specifically, they found that microbial community composition and functional potential … ) conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … or how freshwater ecosystems process methane and organic matter.  However, to get all of the information that SIP …
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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization
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Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing
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Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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Ancient Algae Reveal Secrets of Plant Evolution
… conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research consortium led … as part of a startup grant of the University of Nebraska Lincoln, the Research & Artistry Award of Northern Illinois …
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Learning to Look
… Machine learning approach significantly expands inovirus … a computer could use to conduct a similar type of search in microbial and metagenomic databases. In this case, the … the way we currently isolate and extract viruses,” said the study’s lead author Simon Roux, a JGI research scientist in …
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Uncovering Novel Genomes from Earth’s Microbiomes
… metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the … have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be … Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the environmental …
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Matthew Kellom
… Matt is broadly interested in the interactions between microbial life and environment, and using metagenomics to study these complex natural systems. Microbial communities …
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