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The Case for Conservation
… How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how … Joint Genome Institute was supported by the Office of Science of the U.S. Department of Energy under contract no. …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics … MycoCosm and Fungal Program pages ( https://jgi.doe.gov/our-science/science-programs/fungal-genomics/ ). You can also … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Understanding Wildfire Recovery, Starting in Soil
… at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under Contract No. …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish in hypersaline environments, … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells … uncultivated Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly …
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First Monoploid Reference Sequence of Sugarcane
… a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes … polyploid sugarcane genome now underway as part of the JGI Community Science Program (CSP), a critical factor in …
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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human … Deputy of Operations provides oversight and leadership of JGI operations infrastructure, including space and facilities, finance and … Haas School of Business Served as a reviewer for DOE’s Science & Operations Peer Review of the Center for …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos … published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s … a genus of just under 400 mosses that can carry up to 25 times their dry weight in water, makes up the overwhelming … Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported under contract no. …
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