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JGI Scientists Pen Genome Watch Articles
… us to highlight hot topics in genomics.” And it makes sense to Woyke why JGI would have this role. “We work with …
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JGI@25: Building a Better Bean
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … vulgaris) is actually a vital source of protein in many food-insecure countries around the globe, as well as a cash … income,” McClean said. “Common bean is a very popular food in Central America and Eastern Africa. For smallholder …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text … can apply to study the transcription factors that control how genes are turned on is known as DNA affinity … what TFs and regulatory networks are conserved across fungi.” Using multiDAP-seq, Nagy’s team is comparing five …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … down hardy plant cell walls and therefore hold clues to how humans could do the same on an industrial scale to … that could lead to more sustainable energy production.  However, less than 10% of the microbes found in any …
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JGIota: Looking Back at Methane-Making Microbes
We count on livestock for food and fiber, but raising these animals also produces an …
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Honey Bee Gut Microbiota Divvy Up Dinner
… down polysaccharides. But scientists have wondered exactly how the microbial community carries out its helpful … bacterial clades can metabolize hemicellulose and pectin. However, the two specialize to an extent.  Gilliamella  … in winter instead. So, evolutionarily, it might make sense that honey bees have a more efficient microbiome to …
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Triggering Morel Fruiting
… a DOE Office of Science User Facility,  reported on just how morel fruiting is triggered when nutrients are acquired … aims to provide genomic information for every family of fungi. In the following guest piece, JGI user Dr. Tan … the fruiting of soil saprotrophic mushrooms. To date, how the nutritional acquisition of the morel mycelium is …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… deep subsurface ecosystems. A team of researchers described how the viruses repeatedly attempted to infect and destroy the host archaea – and how the  microbes resist. The battle waged below the Earth’s … releasing fresh organic carbon which can serve as a food source for other microbes into the environment. Summary …
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Daniel Udwary
… elucidation of biosynthetic gene clusters in bacteria and fungi. Prior to joining the JGI, he spent time as a faculty …
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JGI@25: Using Team Science to Build Communities Around Data
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the foundation for an … Riverside would focus on broad sampling of early diverging fungi, and Francis Martin of the French National Institute …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… mechanism to turn off shattering and domesticate crops.” How shattering occurs varies widely between crops, Kellogg … a gene associated with leaf angle, which determines how much sunlight leaves can get and in turn serves as a … education and outreach aim to have impact at the nexus of food security and the environment, and position the St. …
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2024 Progress Report
… functions to meet climate and energy goals, improve food security and sustainability, develop new materials, and … presented and attended meetings around the world to showcase the JGI’s science and what we enable for our users. … I can say that a key area for the JGI’s evolution is in how we manage our data and how we can make this more …
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