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Viruses Reprogram Cells into Different Virocells
… or quacks like one, is it still a duck? For a team led by researchers from The Ohio State University and the … diversity with an aim to improve predictive ecosystems models, University of Michigan’s Melissa Duhaime and The … Researchers have the opportunity to combine the power of genomics and molecular characterization offered at multiple …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for … The Science In  PLoS Pathogens , a team of faculty and researchers describe a workforce development program for … higher education that develops skills in fungal biology and genomics.  Myco-Ed :  The Mycological Curriculum for …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … yet much of it remains unknown. For more than a decade, researchers around the world have collaborated with the U.S. … knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… As  reported January 27, 2021 in  Nature , the team led by researchers at the University of Texas (UT) at Austin, the … sites. “This paper is a combination of really cutting-edge genomics and genetic analysis with large scale data … copies across the chromosomes. “In the past, we needed model systems to test genetic hypotheses in species with …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal … new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – … developing new experimental capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report …
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Improving the Cacao Genome and Phytozome
… brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the … around the world. That said, we recognize that workforce in genomics, including JGI, is not representative of the …
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New and Improved: Eucalyptus Reference is Now Accessible
… assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in … This allows for more accurate and detailed comparative genomic analyses.   The Impact There are 900 species of … WIP proposal ID: 508017, Myburg, Wegrzyn, Borevitz) conducted by the US Department of Energy Joint Genome …
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Exploring Polymorphisms Created by Transposable Elements
… measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … kingdom, they are well-suited to train machine learning models that predict biological traits from DNA sequences. … search environmental data, they developed a two-stage metagenomic detection pipeline: First, they scanned over 26,000 …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and … Data Collaborative.  This award recognizes distinguished research achievements that support open data practices, … Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a combination of experimental …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. … greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows users … complex and difficult to sequence and understand. A team of researchers led by Algal Genomics Program lead Igor …
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