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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire … also tried to hone in on the function of the genes via 3D modeling, and comparing structures of the unknown to those …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have … the soybean genome sequence immediately spurred further research and additional discoveries. Stacey noted that even … to maximize yields for biofuel, the JGI has also helped researchers understand a fungus that threatens these crops …
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Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGAT)
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Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10T)
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… the genomes of two varieties of a close relative and model species. The following year saw the beginnings of … using switchgrass samples from these gardens, a team led by researchers at the University of Texas at Austin produced a … and environments. The long-term investments in both the genomics and gardens are helping these shrubby grasses …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in … sediment with collaborators at the Center for Scientific Research and Higher Education at Ensenada (CICESE) in her … is on cone snails, C. californicus in particular, as a model system for venom-microbe interactions. Cone snail …
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The More the Merrier: Making the Case for Plant Pan-genomes
Brachypodium model system traces polyploid genome evolution. Flowering … traits. Given the importance of polyploidy in plants, researchers have sought to learn the origins, evolution and … senior authors. “It offers us the possibility to explore genomically the whole complex of progenitors and descendant …
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The JGI announces 2024 awardees for our Community Science Program annual call
Adriana Corales, Hugh Cross, Megan DeMarche, Joanne Emerson, Matthew Hudson, Megan Keller and Julia Kelliher; [below] … who heads JGI’s User Programs. “These PIs have proposed research that addresses various important scientific … outcomes.” The annual CSP call is focused on large-scale genomic science projects relevant to the DOE’s Office of …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
Program Annual Call. These projects include cutting-edge research into microbial communities — from freshwater … mats — to reveal how these systems adapt and contribute to global biogeochemical cycles. Additional … awardee.  The CSP Annual call is focused on large-scale genomic science projects relevant to the DOE’s Office of …
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Dan Rokhsar
… in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … a Professor of Genetics, Genomics and Development after his research interests shifted from condensed matter physics to …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database … prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with … bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of with more than 8,300 …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, … their expertise in developing and managing public viral genomics resources such as analytical tools and data …
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