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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… to stress. The Impact Despite constituting less than 5% of land on Earth, peatlands store approximately one-third … peat from these boggy wetlands produces an estimated 5% of annual greenhouse gas emissions. Understanding how … and filtering water. Peat formed there over thousands of years sequesters more carbon than all other vegetation types …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … at over 180 organizations in 29 U.S. states and 35 countries. (Graphic: Neil Byers) The JGI launched the 1000 … has “significantly advanced our understanding of 1 billion years of evolution in Kingdom Fungi — from phylogenetic …
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Marine Microbe Contains Multitudes
… to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have wondered, how can SAR324 … Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii Ocean Time-series (HOT), they collected …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… a genome duplication event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and … high-quality genome assemblies and annotations for 35 species representing all major evolutionary lineages in … over seven million repetitive elements that account for 85.2% of the C-fern assembly. While they did identify a …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … the paper was published in 2014, it has been cited 1,025 times and the seemingly humble common bean has fueled … iron content and have a longer shelf-life — up to four years. Work is now underway to transfer the trait into other …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … then, 2,993 publications, 107 patent applications, and 53 patents have cited that genome. Since publishing that … team studied sorghum plants in drought conditions for three years (2016-2018) in the field in Parlier, California at the …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… space that has resulted in many impactful papers in recent years, but are also looking forward to jointly expanding … the University of Duisburg-Essen in Germany in 2024 and 2025.  Participants from the UDE were Alexander Probst, Stephan …
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Making a Lichen Together
… that in this symbiosis going back hundreds of millions of years, accidental gene swaps via horizontal gene transfer … and Policy (for DNA sequencing and assembly); by a three-year subcontract to DA, FL, and FD (for bioinformatics) from … the U.S. DOE Office of Science under Contract No. DE-AC02-05CH11231. The work of MP, DL and SSM was supported by the …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE … The work is supported by NIH Common Fund grant 1U24HL175772-01. This is not the first time Kyrpides and his …
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An Automated Tool for Assessing Virus Data Quality
… on open ocean samples. CheckV identified a total of 44,652 complete or near-complete viral genomes across both … the U.S. Department of Energy under contract no. DE-AC02-05CH11231. This work was also supported the grant …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… than expected. The transcriptome data had suggested about a 50/50 split between fungal and bacterial enzymes. Yet, they … work was supported by the Czech Science Foundation (18- 25706S and 20-02022Y), by the Ministry of Education, Youth …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Germany. The BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from … new GEBA-Actino genome sequences were combined with nearly 5,000 publicly available ones and 1,100 metagenome-assembled …
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