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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … the paper was published in 2014, it has been cited 1,025 times and the seemingly humble common bean has fueled … iron content and have a longer shelf-life — up to four years. Work is now underway to transfer the trait into other …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … then, 2,993 publications, 107 patent applications, and 53 patents have cited that genome. Since publishing that … team studied sorghum plants in drought conditions for three years (2016-2018) in the field in Parlier, California at the …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… space that has resulted in many impactful papers in recent years, but are also looking forward to jointly expanding … the University of Duisburg-Essen in Germany in 2024 and 2025.  Participants from the UDE were Alexander Probst, Stephan …
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Making a Lichen Together
… that in this symbiosis going back hundreds of millions of years, accidental gene swaps via horizontal gene transfer … and Policy (for DNA sequencing and assembly); by a three-year subcontract to DA, FL, and FD (for bioinformatics) from … the U.S. DOE Office of Science under Contract No. DE-AC02-05CH11231. The work of MP, DL and SSM was supported by the …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE … The work is supported by NIH Common Fund grant 1U24HL175772-01. This is not the first time Kyrpides and his …
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An Automated Tool for Assessing Virus Data Quality
… on open ocean samples. CheckV identified a total of 44,652 complete or near-complete viral genomes across both … the U.S. Department of Energy under contract no. DE-AC02-05CH11231. This work was also supported the grant …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… than expected. The transcriptome data had suggested about a 50/50 split between fungal and bacterial enzymes. Yet, they … work was supported by the Czech Science Foundation (18- 25706S and 20-02022Y), by the Ministry of Education, Youth …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Germany. The BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from … new GEBA-Actino genome sequences were combined with nearly 5,000 publicly available ones and 1,100 metagenome-assembled …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … is interesting because in humans (where it’s called RECQL5), the loss of this protein is associated with cancers. …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant … gene expression within circular capture areas roughly 55-microns in diameter — about the width of a human hair. At …
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SPRUCE-ing Up Science
… your point across as quickly as possible,” he said. After years of practice presenting his science and learning what … resilience to warming . New Phytol. 2022 Jun;234(6):2111-2125. doi: 10.1111/nph.18072.   Byline: Ashleigh Papp …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… heads JGI’s  Microbial Program . The team mined more than 8,500 publicly available metagenome datasets generated from … 2,074 genomes of large and giant viruses. More than 50,000 copies of the MCP were identified in the metagenomic … viral lineages, and predominantly in samples from marine (55%) and freshwater (40%) environments. As a result, the …
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