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Model Fern Reveals Insight into DNA Thievery in Ferns
… a genome duplication event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and … array of defense mechanisms. The Impact There are over 10,400 species of ferns alive today. Boasting adaptations in … (NSF; grant PRFB IOS-1907220 to D.B.M.; grant MCB-1856143 to R.J.S.; grant DEB-1911459 to P.G.W.; grant MRI-1828479 …
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JGI@25: Building a Better Bean
… the common bean. That work was published online June 8, 2014 in the journal Nature Genetics . “Common beans are a major … for large producers. The team sequenced and assembled a 473-million basepair genome of the common bean, identifying … iron content and have a longer shelf-life — up to four years. Work is now underway to transfer the trait into other …
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JGI@25: Studying Sorghum’s Survival Skills
… in common with certain other cereal crops: It performs C4 photosynthesis, which is the fastest way for plants to … sequenced genome (following rice in 2002) and the first C4 crop to be fully analyzed. 2014: The JGI updates its … team studied sorghum plants in drought conditions for three years (2016-2018) in the field in Parlier, California at the …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… space that has resulted in many impactful papers in recent years, but are also looking forward to jointly expanding … at the University of Duisburg-Essen in Germany in 2024 and 2025.  Participants from the UDE were Alexander …
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Making a Lichen Together
… that in this symbiosis going back hundreds of millions of years, accidental gene swaps via horizontal gene transfer … and Policy (for DNA sequencing and assembly); by a three-year subcontract to DA, FL, and FD (for bioinformatics) from a DOE grant No 112442 to Pacific Northwest National Laboratory; and by a …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE … The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and … mobile genetic elements ( Nature Biotechnology , 2024), and iPHoP , an integrated machine learning framework to …
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An Automated Tool for Assessing Virus Data Quality
… based on open ocean samples. CheckV identified a total of 44,652 complete or near-complete viral genomes across both … virus genome. CheckV has already been applied to over 2.4 million viral genomes available in the latest release of …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Integrating Collaborations for User Science (FICUS; #49499) program and used resources at the DOE Joint Genome … and the Environmental Molecular Sciences Laboratory (grid.436923.9), which are DOE Office of Science User Facilities. …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Germany. The BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, … ( IMG/M ) portal. As part of a comparative analysis, 824 new GEBA-Actino genome sequences were combined with nearly …
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JGI@25: The Little Alga That Could
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant … to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better …
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SPRUCE-ing Up Science
… your point across as quickly as possible,” he said. After years of practice presenting his science and learning what … peatmoss resilience to warming . New Phytol. 2022 Jun;234(6):2111-2125. doi: 10.1111/nph.18072.   Byline: Ashleigh …
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