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Model Fern Reveals Insight into DNA Thievery in Ferns
… a genome duplication event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and … (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has … over seven million repetitive elements that account for 85.2% of the C-fern assembly. While they did identify a couple …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … iron content and have a longer shelf-life — up to four years. Work is now underway to transfer the trait into other …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … team studied sorghum plants in drought conditions for three years (2016-2018) in the field in Parlier, California at the …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
Understanding (MoU) signed between UDE and Berkeley Lab in 2022, the delegation from UDE familiarized themselves with the … space that has resulted in many impactful papers in recent years, but are also looking forward to jointly expanding …
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Making a Lichen Together
Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are … that in this symbiosis going back hundreds of millions of years, accidental gene swaps via horizontal gene transfer … and Policy (for DNA sequencing and assembly); by a three-year subcontract to DA, FL, and FD (for bioinformatics) from …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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An Automated Tool for Assessing Virus Data Quality
… suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a total of 44,652 complete or near-complete viral genomes across both … virus genome. CheckV has already been applied to over 2.4 million viral genomes available in the latest release of …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… work was supported by the Czech Science Foundation (18- 25706S and 20-02022Y), by the Ministry of Education, Youth and Sports of …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … Germany. The BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant … to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better …
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SPRUCE-ing Up Science
When Lawrence embarked on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand … his PhD dissertation defense presentations and beyond. In 2018, a friend of his wife’s passed along an open postdoc … your point across as quickly as possible,” he said. After years of practice presenting his science and learning what …
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