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Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect … four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Laboratory, and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … in Sorghum (EPICON) is a five-year, multi-institution project funded by the DOE Office of Biological and … (AMF), known to provide plants with nutrients and pathogen protection. Specifically, gene expression in that set, …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the … at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on … BA in Biology, Aristotle University of Thessaloniki, Greece PhD in Molecular Biology and Biotechnology, …
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Metagenomes and Metagenome-Assembled Genomes from Substrate-Amended Hot Spring Sediment Incubations from Yellowstone National Park
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last … the specialized software and supercomputers behind this project. But every part of this project depends on lakewater …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month events throughout April. This year, a new group at the … Plant Sale. All year, the JGI helps support finding solutions to clean energy and environmental challenges. And many … now IGB-wide ZERO Waste Initiative began its most ambitious project yet: a special recycling program to recycle lab …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint … specific procedure.” The rapport they built during this project and others (including the dissertation that preceded …
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Overview of the Genomes OnLine Database (GOLD)
… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Disclaimer
… NOTICE Information from this server resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by … a particular purpose, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … a research scientist at the JGI and Molecular Foundry, and the study’s senior author. In other proteins, two …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of … Berkeley National Laboratory (Berkeley Lab), led the project. He explained that large language models—artificial … to the financial sector — whether to identify studies and protocols or analyze and predict market trends. “Genomes do …
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