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Establishing a versatile toolkit of flux enhanced strains and cell extracts for pathway prototyping
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Ploidy evolution in a wild yeast is linked to an interaction between cell type and metabolism
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Root cap cell corpse clearance limits microbial colonization in Arabidopsis thaliana
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Autophagy restricts symbiosis-associated cell death and regulates colonization by Serendipita indica in Arabidopsis
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other … a senior author of the paper. “This paper is the first one to survey a huge amount of natural diversity and say, …
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JGI & KBase at PAG XXVII
… 6:51 PM Evolution of Sex Chromosomes in the Moss Ceratodon 7:09 PM Bioinformatic Approach to Discovering Promoters Regulating Poplar Drought Response … Changes during Leaf Senescence in  Populus 8:03 PM Natural Diversity in  Setaria  and a Novel Gene for Shattering   In …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv University in … the world, resulting in a five-fold increase of RNA virus diversity. “The world of viruses around us is vast, and we … said Eugene Koonin, a senior investigator at the NCBI and one of the senior authors on the paper, of the uncovered …
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JGI@25: Using Team Science to Build Communities Around Data
… with at least two genomes, and another 190 families with one. There are another 100 genomes in progress and 200 that … to evolution of genomic mechanisms — resulting in the diversity of fungal phenotypes and a myriad of ecologies.” … of Nature Plants . C-fern has a genome approximately three times the size of the human genome. There are four more fern …
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A Sorghum Pangenome Opens More Doors to Discovery
… harness the traits that let this biomass powerhouse thrive. Within its genome, Sorghum bicolor holds keys to drought and … and more — however, a single reference genome shows only one slice of the adaptation possible for this plant. In other lines around the world, much more genetic diversity exists.  Now, researchers have brought many …
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Pinning Down a Piece of Photosynthesis
… Communications takes on the challenge of understanding one of these proteins — and its role in photosynthesis — in … along these lines came from UC Berkeley professor and longtime JGI collaborator Sabeeha Merchant’s group. In 2011, … structure of the protein related to its function inside the cell, Grosjean used the JGI-developed  guideRNA and Sequence …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in … It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used … Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from the lab to the classroom. …
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Complete Genome Sequences of Two Phylogenetically Distinct Nitrospina Strains Isolated from the Atlantic and Pacific Oceans
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