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Partners
… The JGI leverages its existing partnerships and develops others providing complementary expertise to advance the science and serve as impact multipliers . The JGI has a … Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research … one of which is sweet sorghum Rio from a JGI Community Science Program project and another is Lupinus albus from a …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … — but the experts we were able to work with on this project to ask questions about structure and function,” …
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How Microbes Can Protect Plants in Drier Straits
… A mini-episode looking at the efforts of Pankaj Trivedi, whose New Investigator … proposal was recently approved through the JGI Community Science Program, to use microbiome science to help make plants more resilient to drought. …
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JGI User Executive Committee Expands
… Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … environments. He’s been involved in several plant genome projects through the Community Science Program. As a UEC …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays ) produces a plethora of … sesquiterpenoids, National Science Foundation Plant-Biotic Interactions Program (grant no. 1758976 to E.S. and P.Z.) …
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Understanding Wildfire Recovery, Starting in Soil
… at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of … DOE Office of Science National User Facilities in a single project. … FTICR-MS analyses were performed under the Facilities Integrating Collaborations for User Science (FICUS) …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an … and comprehensive database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into … than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency … to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome Portal .) The team … ) conducted by the U.S. Department of Energy Joint Genome Institute (JGI) ( https://ror.org/04xm1d337 ), a …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … in human microbiome research at the Institute for Genome Sciences at the University of Maryland School of Medicine … to learn more about the program's areas of focus, major initiatives and more.  …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce … sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, Baldrian’s team …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome sequence can … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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