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… and skill development while curating reusable microbiome data. Undergraduate educators are partnering with the JGI … in laboratory techniques through hands-on experiments and data analysis. Starting with isolating and identifying fungi … in parallel. While KBase does not currently have all the tools for complete processing and analysis of fungal data, …

… Jasmyn provides bioinformatics tools and analysis support for user science, with a focus on …

… The JGI is eager to work and share our tools with a widening circle of researchers. The JGI is eager to work and share our tools with a widening circle of researchers. That’s why …

… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. … same route. “It was really amazing how the quality of the data improved thanks to that massive amount of new genomes,” …

… D are available for comparative analysis on JGI’s plant data portal  Phytozome , which is a community repository and … Cotton on Phytozome Data Portal …

… and chemistry for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral … Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite … important ions and positions in mass spectrometry imaging data using CUR matrix decompositions. Analytical chemistry, …

… variation in its progeny. The study’s transcriptomic data also identified many genes potentially important for … Fungus Genome on MycoCosm data portal … Alga Genome on PhycoCosm data portal … Datasets … Datasets …

… advances in sequencing technologies and bioinformatic tools have helped decode the genomes of tens of thousands of … of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of … was identified from microbial and metagenome sequence data sets generated from a handful of hot springs, including …

… I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing … the door for me in the sense that I learned many different tools in bioinformatics research. Also, it consolidated my … a STEM career, particularly one that incorporates big data. A large part of my project this summer was utilizing a …

… ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted … predictor of gene expression levels using machine learning tools. “This was very exciting to see how Rhondene not only … the research question and applied it to such a large data set, but also went all the way through to convert her …

… IMG/VR data portal …

… research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to … She also leads the DOE’s multi-lab National Microbiome Data Collaborative (NMDC). Prospective users with questions … Wood-Charlson EM, et al. 2020. The National Microbiome Data Collaborative: enabling microbiome science. Rev. …