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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … challenges were associated with getting good transformation systems going. That has a lot to do with, well, the fact … Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, …
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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VISTA Region Viewer (RViewer)—a computational system for prioritizing genomic intervals for biomedical studies
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Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems
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Development of a Recombineering System for the Acetogen Eubacterium limosum with Cas9 Counterselection for Markerless Genome Engineering
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Genomic determination of breeding systems and trans-specific evolution of HD MAT genes in suilloid fungi.
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides access to …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program … focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for … al. 2020. A scoutRNA Is Required for Some Type V CRISPR-Cas Systems. Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant …
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2022 Progress Report
Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or … can turn on the natural product, say clusters or expression systems so that-- BETSY PARKINSON: Exactly. DAN: --you get …
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10 From JGI on the 2019 Highly Cited Researchers List
Lead Dan Rokhsar, Molecular Biology & Genetics Staff Data Scientist Asaf Salamov, Plant & Animal Science category … and Molecular Biology & Genetics categories Microbial Systems research group lead and User Programs Deputy … a long-term project to sequence, annotate and analyze the genomes of more than 300 Aspergillus Go here to learn more …
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A scoutRNA Is Required for Some Type V CRISPR-Cas Systems
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