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Ben Bowen
… and chemistry for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral … Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite … important ions and positions in mass spectrometry imaging data using CUR matrix decompositions. Analytical chemistry, …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most … illustrates how the research community brings together the data resources enabled by the DOE Biological and …
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Gut Fungi: Unexpected Source of Novel Chemicals
… natural products, O’Malley and her team plan to use genetic tools to boost production and isolate the compounds. …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… find genetic regions of interest.” The combination of field data and genetic information has allowed the research team … cutting-edge genomics and genetic analysis with large scale data collection,” he added. Jeremy Schmutz , head of the  … puzzle with just 50 pieces. The combination of new genetic tools and experimental gardens allow researchers to detect …
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How to Submit Sequencing Samples
GenTegra RNA Preparation Procedure … 1) Complete Sample Metadata form Sample metadata is collected via spreadsheet or directly via a web … See our Taxonomy Quick Guide. PM sends PI the sample metadata spreadsheet to fill out (or provides a link to complete …
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Natural Prodcast Episode 16: Marcy Balunas
… massive problems just as much as it brings about massive data into really interesting ways to look at our systems. … figuring out how to filter out noise from the metabolomics data. We’ve done a lot of work learning about how to use … strain to look at.  And then figuring out how to show this data and to do it in a way that makes sense. And I always …
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Emiley Eloe-Fadrosh
… research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to … She also leads the DOE’s multi-lab National Microbiome Data Collaborative (NMDC). … Emiley Eloe-Fadrosh is the … Wood-Charlson EM, et al. 2020. The National Microbiome Data Collaborative: enabling microbiome science. Rev. …
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CSP Functional Genomics
… for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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Natural Prodcast Episode 7: Ben Shen
… first one, first that we call antibody drug conjugates, abbreviated as “ADC”, was approved in the year 2000, and … so everybody, readers of the library, can come to our databases and look for the specific information they are … the genomics, with the bioinformatics and with the bigger data, another area I see a great potential will be machine …
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Enlarging Windows into Understanding Gene Functions
Berkeley National Laboratory (Berkeley Lab). And one of the tools that researchers can apply to study the transcription … (cDNA), reducing the amount of time it takes to produce a dataset from months to days and halving the total reagent …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… such as individual genes, whole pathways, genome-editing tools, and reporters.” JGI-developed genetic engineering …
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A Plant Root Atlas for Tracking Developmental Trajectories
… and combining the information with previously published datasets. The work was  recently published in the journal  … “This represents the largest integration of single-cell datasets in plants and provides a foundation for still … Strategic Plan. The present paper provides a foundational data set that is now available through a new  single-cell …
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