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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… of these talks below, starting with Ari Patrinos. The Genomics Arms Race Ari Patrinos , Former Director of DOE’s … artist Nigel Sussman recently finished at the Integrative Genomics Building, the JGI’s home at Berkeley Lab. Like the … He reminisced over the building of the Integrative Genomics Building, the JGI’s home at Berkeley Lab, as …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in … the research of 13 JGI scientists through the JGI-UC Merced Genomics Internship.     …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer … beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell … Simon Roux, a member of Eloe-Fadrosh’s Environmental Genomics group, makes a pitch for readers to get involved in …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… in carbon fixation in the dark ocean. Combining single cell genomics and synthetic biology, a team studying microbial … Woyke and her colleagues harnessed the JGI’s single cell genomics capabilities to assemble, identify, and … of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI users …
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Matthew Kellom
… between microbial life and environment, and using metagenomics to study these complex natural systems. Microbial … are of particular interest. Matt also supports various CSP and FICUS user projects for the Metagenome Program. …
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Eelgrass Proves to Be Much Younger Than We Thought
… Energy Joint Genome Institute Community Sequencing Program (CSP 502951, 2016, Population and evolutionary genomics of host–microbiome interactions in Zostera marina …
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A More Intuitive Phytozome Interface
… Phytozome accessible as an interactive website. Since May 2019, v12 has not had any additional genomes added to it, … Phytozome v13 has been accessible to users since 2019.  We have attempted to make sure users will continue to … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Virus-Microbe Interactions of Mud Island Mangroves
… worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s research builds on that. “The purpose of this CSP is to better understand methane cycling in mangrove … “In terms of my project, I wanted to incorporate that CSP, but also look at how viruses might be influencing the …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a … Examining databases like MycoCosm , the JGI’s online fungal genomics resource platform, reveals a stark imbalance. More … The MycoCosm platform has become a central hub for fungal genomics, and is already being used as a training ground for …
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A Complex Confection Decoded: Sugarcane Reference Genome
… the HudsonAlpha Institute for Biotechnology and the Arizona Genomics Institute. The work was partly enabled by the JGI’s …
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Cultivating Symbiotic Antarctic Microbes
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Frederik Schulz
… sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to find novel functions that … Krinos et al. 2024. Time-series metagenomics reveals changing protistan ecology of a temperate …
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