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Webinar: PhycoCosm Tutorial
… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative … on, there are 7 genomes on NCBI but your portal has only 2 of them. A: Watch the video (above) for the answer provided … genome with itself, to identify regions that might be duplicated? A: Yes, we do routinely calculate self-alignments, …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production … Integrative Genomics Building , JGI’s newly-built home located in the heart of the Berkeley Lab main campus. On …
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Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat
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A photoactive carotenoid protein acting as light intensity sensor
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), as well as … Systems Scientific Focus Area funded by the US Department of Energy (DE-AC02-05CH11231 to J.F.B.). The work ( proposal …
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A User-Centered Approach to Accessing JGI Data
… through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data … program,” he said. “If each kingdom submits the same category of data (key) for their files as a baseline, we can … that users know about the FY Funding Year, and the publication status in addition to the public/private status. Q: …
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Yasuo Yoshikuni
… Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, … design for DOE-mission-relevant discovery and applications. This program has supported over 250 projects since …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … both genome content and structure following a genome duplication event that occured some 60 million years ago. Massive … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) took on the Open …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired … interactions to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their … Brenda Yu Class Year: 1st year graduate student at Stanford University in the Biophysics program. (Graduated from UC …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … includes access to the NEON Biorepository at Arizona State University, which archives and makes available for research … also request access to the  Biological Small-Angle Neutron Scattering (Bio-SANS) instrument available at Oak Ridge …
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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … code of sugarcane, researchers were able to map the location of genes that provide resistance to the brown rust … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), with assistance …
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Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics
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