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Fungal Friends or Foes in Plant Roots
… fungi can form such symbiotic partnerships. To learn more about these other plant-fungal relationships, an … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … The team then compared this dataset against nearly 80 previously published fungal genomes on the JGI data portal …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… well as the evolution of seed plants, the fern’s distant cousin. Ceratopteris richardii, or C-fern, specifically has … undeniable power of plants, and the lessons they can teach us, are why the U.S. Department of Energy (DOE) Joint Genome … of plant-based biofuels and bioproducts. ( Learn more about OGG in  this episode of to the JGI podcast Genome …
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Green Algae Reveal One mRNA Encodes Many Proteins
… Academy of Sciences , a team of researchers has found numerous examples of polycistronic expression – in which two or … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab and the Environmental … Sciences Laboratory (EMSL), a DOE Office of Science user facility. The work was partly enabled by the …
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A User-Centered Approach to Accessing JGI Data
… plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a … the Data Portal reflects a structural shift in data access. Users were previously limited to accessing data sets within … current Data Restriction Policy requires that users know about the FY Funding Year, and the publication status in …
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Genome Insider
… episode, host Menaka Wilhelm interviews researchers — JGI Users — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. Listen in to explore the data that illuminates …
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Fungus Fuels Tree Growth
… a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can … an endophyte, living between a plant’s root cells. The fungus is almost always found among and within poplar trees, and … were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . …
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The JGI Data Portal: Improving User Experience
… between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download … processes from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal … , and PhycoCosm , serve researchers with unique areas of focus and data and computational needs. Over its 23-year …
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Gene Expression: From On-Off Switch to Dial
… approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of … of essential genes in metabolic networks that were missed using traditional approaches. This novel form of … the realm of bioenergy optimization. Summary Life is all about balance. This study,  recently published in the  …
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Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels
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Metabolomic Patterns of Septoria Canker Resistant and Susceptible Populus trichocarpa Genotypes 24 Hours Postinoculation.
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Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean
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Genome sequences of four novel Endozoicomonas strains associated with a tropical octocoral in a long-term aquarium facility.
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