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The Expanding Universe of Methane Metabolisms in Archaea
… oxidation metabolisms. They also identified a set of 38 marker genes that serve as a core set of genes present in …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
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Rex Malmstrom
… arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative … strategy for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022.   A centimeter-long …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… the Department of Energy (DOE) colleagues. “At that time (1986) 98% of the human genome was thought to be junk DNA, so there … genetics. Drell held the role until he retired in 2018. “While I never said this out loud,” Drell said, speaking …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL). CLS is also supported by a National Science … Computing from the CNSI, MRL: an NSF MRSEC (DMR-1121053) and NSF CNS-0960316. …
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Virus Discoveries that Keep Getting Bigger
… 2020 Research and Innovation Programme (grant agreement no. 832601). …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one …
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Doubling Down on Known Protein Families
… might those ‘unknown unknowns’ hold?  The team started with 8 billion metagenome genes from IMG (the study also … Now, that number is closer to 60,000.  “There is still 70–80% of known microbial diversity out there that is not yet …
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iPHoP: A Matchmaker for Phages and their Hosts
… these different routes. To train the model, the team used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of … has been at the forefront of Covid-19 research (see his  2021 VEGA talk ). A global authority on viruses, Holmes was …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working … enrichment activities. For some students in the 2021 cohort, this was their first internship experience, while …
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