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Single Cell Research Group
… Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased … and sequencing of rumen microbiome members from the Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). … E.M. Stop codon reassignments in the wild. Science 344, 909-13 (2014). Rinke C., Schwientek P., Sczyrba A., Ivanova …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… species, each organism has a relatively small set of around 20 ATs. These ATs have maintained a small and relatively …
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Doubling Down on Known Protein Families
… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … families. From there they focused on families with at least 100 members.  “If you have 100 sequences, the quality of the cluster is significantly …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… to make, and it could be sold in the United States for $50-200, generating a potential profit of $1.4 million …
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Tanja Woyke
… postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research was the symbiont … metagenomics. Taking on a Research Scientist position in 2007, she switched gears from metagenomics to single-cell … into the Microbial Genomics Program Lead position in 2009 and assumed the Deputy Director of User Program position …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on … hills, and it has legacy mining that goes back more than 100 years. And in particular, there’s an inflow from the … you know, within my lifetime, we should hit around nine or 10, which is thought to be where we’re going to level off. …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … in bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005. Otani H, Udwary DW, Mouncey NJ. … of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. Otani H, Mouncey NJ. RIViT-seq enables systematic …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… You’d go find the cash converter box, feed it a $1, $5 or $10 bill and receive a set amount of tokens, commensurate in … large metagenome projects — ultimately assembling over 220 Tb of sequences and obtaining 700 Gb of assemblies. The … in order to enhance what it can offer. As of June 2025, Genome Ocean was ranked the No. 1 most-downloaded …
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VEGA Symposium
… & Berkeley Lab Attendee – $250 Students & Postdocs – $200 Regular Rates (begin September 19, 2026) General & Berkeley Lab Attendee – $300 Students & … (VEGA) symposium will take place November 18-19, 2026 on the UC Berkeley campus. Organized every two years …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By … site and then collect and process the samples starting at 10am Pacific time. JGI researchers helped develop the … Grant GBMF3834 and Alfred P. Sloan Foundation Grant 2013-10-27 (to the University of California, Berkeley [N.V.]); …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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