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… conducted RNA sequencing and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear magnetic …

… data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, … TBK, Chen I-MA et al. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. …

Foundation Graduate Research Fellowship Program ( DGE-1110007 ). SA, AB, and MB were supported by NSF  1706134 . SL …

Genomes from uncultivated bacteria offers clues to ancestral … teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria … Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed Margulisbacteria, and had found they …

New genomes highlight the diversity of white rot fungi in the … around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the …

… collaborators and other scientific organizations. Fungal biologist Stajich from UC Riverside sees the JGI’s …

… that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with … technologies and bioinformatic tools have helped decode the genomes of tens of thousands of previously unknown and … bioinformatics tools for  extracting snippets of microbial genomes directly from environmental sequence data, by …

… through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully … has been no real analysis of protein families from metagenomes per se.”  Recently, other research teams have … from IMG (the study also references data from the JGI’s  Genomes from Earth’s Microbiome , or GEM catalog). Then they …

… developed a method to correctly identify polyploid subgenomes without needing to know the genomes of their ancestors. The method was tested on a number of plants, including  genomes of cotton lineages and the  oilseed crop false flax …

… for the design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and …