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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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Hydrazine Synthase, a Unique Phylomarker with Which To Study the Presence and Biodiversity of Anammox Bacteria
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 … to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then use computational tools to analyze biosynthetic gene clusters and then develop them for a range of …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published in …
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A pipeline for targeted metagenomics of environmental bacteria
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have … refine and improve the process of finding novel Cas genes and CRISPR systems. The collaboration has resulted in … CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna noted in her …
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Visual Comparative Omics of Fungi for Plant Biomass Deconstruction
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Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi)
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Anaerobic gut fungi are an untapped reservoir of natural products
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Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi
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Comparative genomics of xylose-fermenting fungi for enhanced biofuel production
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Biomass‐degrading enzymes are catabolite repressed in anaerobic gut fungi
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