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Frameshift detection in prokaryotic genomic sequences.
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Draft Genome Sequences of Switchgrass Diazotrophs
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Partnerships: Myco-Ed
… through isolation and genome sequencing of new fungal species.  Students collect fungi, sterilize tissue, isolate … and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a … and researchers, facilitating the transition from genomic sequences to biological inference and understanding of …
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Microbiome Data Science Team
… science in tackling grand challenges in Biology, with a special focus on microbiome research.  These efforts include … with important biotechnological applications (e.g., new CRISPR-Cas variants and new CRISPR-Cas types) (Nature Communications 2017, Science 2018, …
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A Natural Mechanism Can Turbocharge Viral Evolution
… means using proteins on its tail fibers to latch onto a specific target on the microbial cell’s membrane. Two … to adapt to changing environments. It also sheds light on why the rapid injection of mutations in a particular gene … all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and is the head …
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… of Energy & Environment Meeting.  A wide array of invited speakers shared how research infrastructure – DNA … organisms can do. And we need the field’s context to see why it matters.” As his career progressed, Hungate has … these amazing technologies that the JGI has to identify and sequence who’s making what, that the context at a microscale …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… huge, and incredibly complex — making it difficult to grasp a deeper understanding of fundamental aspects of fern … power of plants, and the lessons they can teach us, are why the U.S. Department of Energy (DOE) Joint Genome … richardii marks the first published manuscript of a genome sequence generated through the OGG. For a long time, C-fern …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI … Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for which quality DNA … in line with the JGI’s strategic initiatives. These specialized compounds enable organisms to respond to …
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Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria
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Reference genome sequence of the model plant Setaria
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Genome sequence of the model rice variety KitaakeX
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