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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters … Thomas Mock, a marine microbiologist at the University of East Anglia, leads this effort to understand … latitudes from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … the National Academy of Sciences , researchers at Stanford University, the Chan Zuckerberg Biohub, and the U.S. …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … role in soil carbon storage. Summary There are three types of fungal saprotrophs in the forest. White rot can break … (INRAE), Hungary’s Biological Research Centre, Clark University, and the U.S. Department of Energy (DOE) Joint …
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Boosting Small Molecule Production in Super “Soup”
… Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical … Nature Communications , researchers led by Hal Alper at The University of Texas at Austin and Michael Jewett of … than were noted inside the cell. “One of the huge advantages of the cell-free system is that the cells are no …
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JGI Hosts GPU Hackathon in May
… Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore applications in …
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JGI on the 2021 Highly Cited Researchers List
… in their chosen field or fields through the publication of multiple highly cited papers during the last decade.” … Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, reported on over the … Additionally, working with Michelle O’Malley’s team at the University of California, Santa Barbara, he and his …
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Mapping Heat Resistance in Yeasts
… annotation in fungal genomes. The Science In a proof-of-concept study, researchers demonstrated that a new … 2018, in Nature Genetics , a team led by researchers at the University of California, Berkeley and the Buck Institute … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … from these gardens, a team led by researchers at the University of Texas at Austin produced a high-quality …
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Charting Progress toward Professional Goals
… from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help inspire and train the … program, while Oliver Benelli applied through the University of California's  CalTeach initiative. During … My name is Sally Liao. I am a rising junior at Northwestern University. I'm in the SULI program, and I'm studying …
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Accelerating Metagenomics Discoveries with Deep Learning
… in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … (Andrew Tritt of CRD and, independently, Ying Zhang of the University of Rhode Island), and to bin metagenomic contigs …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … The origin of this relationship though, is often antagonistic and the parasite first needs to secure its own … a collaborative effort led by researchers at Cornell University and scientists at the Joint Genome Institute, a …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … Pacific Northwest National Laboratory, Northern Arizona University, Argonne National Laboratory and the JGI.  With … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host …
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