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Ray Turner Completes Last Tour of Lab Duty at JGI
Ray oversaw the acquisition and renovation of Building 310, adding the crowning piece of the entire 80,000 square … Ray won’t be logging the miles on a daily commute (over 100 roundtrip every day, conservatively estimated to be over … Division and then to Chief Operating Officer for the Joint BioEnergy Institute and Deputy for Operations Biological …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, … genomes from microorganisms are shotgun (group) metagenomic sequencing and single-cell (individual) sequencing. Shotgun metagenomic sequencing takes much less time than its …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… genomics and transcriptomics to discover another advantage these fungi wield: the capacity to form enzyme …
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How to Target a Microbial Needle within a Community Haystack
… of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their … their environments. Summary The traditional shotgun metagenomics approach to learning more about environmental …
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Progress Reports: 2002–2020
Report … FY12 Progress Report … FY11 Progress Report … FY10 Progress Report … FY09 Progress Report … FY08 Progress …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. … Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and Development Program of China (2017YFC0505203, 2016YFD0600101), and the National Key Project for Basic Research …
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Training the Next Generation of Talent
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Learning to Look
… use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 inovirus-like sequences compared to the 56 previously …
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Uncovering Novel Genomes from Earth’s Microbiomes
… and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … sequencing and analysis. “Using a technique called metagenome binning, we were able to reconstruct thousands of metagenome-assembled genomes (MAGs) directly from sequenced …
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Pinning Down a Piece of Photosynthesis
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JGI-UC Merced Interns Share Their 2021 Experiences
… … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on … of Rice and Arabidopsis Roots … Making Big Data Metagenomic Clustering Scalable … Cataloging Lineage Specific …
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