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Metagenome Program
… diversity and metabolic potential, with implications for energy production, environmental sustainability, and … that support user analysis of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional … viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative …
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Plant-Microbial Interactions Group
… experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … 10.1016/j.celrep.2023.112676 10.1016/j.devcel.2022.01.008 10.1038/s42003-021-02477-4 … 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: …
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A Step Toward Controlling Soybean Rust
… , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome …
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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and contribute to ongoing projects. In one way or another, they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an experienced career …
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Ancient Algae Reveal Secrets of Plant Evolution
… of how plants adapted to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … ancient algae. Essentially, even before the first plants appeared on land, these algae had a genetic toolkit for …
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Jay Keasling
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Cataloging the Microbes that Manage the Health of River Systems
States. They also provided multiple access points to the information. The team harnessed a community-science program to … microplastics that might be added to the water along the way, impacting its quality and in turn affecting … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University …
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Jeremy Schmutz
Genome Institute dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community …
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Picking Up Threads of Cotton Genomics
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … , both faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new cotton work, and even the original cotton …
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … for stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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Extracting the Secrets of Secondary Metabolites
… secondary metabolites, those molecules not essential for growth yet essential for survival, may now be easier to … be activated in lab environments. CRAGE made some headway in overcoming this obstacle when it hit the scene in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Tracing the Evolution of Shiitake Mushrooms
… 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … decayers, Lentinula fungi access carbon previously locked away in wood, converting it into their own carbon-rich … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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