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Contrasting Modes of Mitochondrial Genome Evolution in Sister Taxa of Wood-Eating Marine Bivalves (Teredinidae and Xylophagaidae)
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available … the same 15 core genes — 14 encoding energy-production proteins plus one ribosomal protein gene — were present in … in Rozella allomycis , an early-diverging parasitic fungus to more than one-million base pairs in desert …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial … One , engineering different gene deletions in four gammaproteobacterial species, and then removing the editing …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad Avenue Plume … several communities in New Mexico via leakage from a local dry-cleaner. Researchers  identified two bacteria,  …
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DAP-seq Drives Robust Mapping of Gene Regulation
… yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated is like … located at Lawrence Berkeley National Laboratory. “These proteins’ binding preferences are very, very stable over long … us profile more cells for the same cost, and it actually made the data cleaner.”   By integrating DAP-seq binding …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — Summit and Frontier — that …
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Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae
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Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies
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Intrinsic and Extrinsic Programming of Product Chain Length and Release Mode in Fungal Collaborating Iterative Polyketide Synthases
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Genes and genome‐resolved metagenomics reveal the microbial functional make up of Amazon peatlands under geochemical gradients
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. Despite advances in sequencing technologies and … Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… (JGI) and University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to … them has brought invaluable insights, thoughts, and explorations that has led to groundbreaking science and … gathered at the Integrative Genomics Building, the JGI’s home at Berkeley Lab, as representatives highlighted the …
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