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A synthesis of bacterial and archaeal phenotypic trait data
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Introducing New Members of the JGI User Executive Committee
… new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa … of members. Each of the researchers had particular reasons for wanting to serve on the UEC. Hatzenpichler, who studies sediment-dwelling archaea, expressed his interest in giving a voice to JGI …
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Tracing the Evolution of Shiitake Mushrooms
… the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the … besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from around the world. By … 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons … his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … dissertation defense presentations and beyond. In 2018, a friend of his wife’s passed along an open postdoc position …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
More than 20 UC Merced students have contributed to the research of … Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor Suzanne Sindi from … around the world. That said, we recognize that workforce in genomics, including JGI, is not representative of the …
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Genomic profiles of four novel cyanobacteria MAGs from Lake Vanda, Antarctica: insights into photosynthesis, cold tolerance, and the circadian clock
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between … successfully automated aspects of a commonly-used process for studying microbial communities, with results published … a wide variety of microbes, including both bacteria and archaea, actively engaging with the fungi — highlighting the …
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Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows … dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … DGRs have been found in other viruses, bacteria, and archaea. But how widely distributed they are, and the roles …
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Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives
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David Goodstein
With a background in experimental and computational surface … and semiconductor equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building … Genome Project, he began developing larger comparative genomic systems as the JGI’s eukaryote research efforts …
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