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Tomas Tyml
… and genomics to study endosymbiotic associations within microbial eukaryotes. He hopes to broaden our understanding of the roles these associations play in the evolutionary history of …
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Maureen Berg
Maureen is currently developing new high-resolution and high-throughput methods to link … these new methods, she hopes to expand our understanding of the roles that viruses play in their ecosystems, particularly in …
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to … for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed 13,700 metabolomics samples With our users, …
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Learning to Look
Machine learning approach significantly expands inovirus … “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … which are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not …
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Meeting Code of Conduct
All participants and staff of the JGI events are required to adhere to the following Code of Conduct. Event organizers will enforce this Code …
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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked by a … over one “petabase” – a quadrillion nucleotide bases of DNA sequence to the public data repositories over its now …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his … at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of … Microbio 2:17087. Mondo et al (2017)  Widespread adenine N6-methylation of active genes in fungi.  Nature Genet.  …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … and PPRD could help with understanding gene functional roles, but the experimental inconsistency makes …
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Trent Northen
… is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences … already suspected: these microbial groups play different roles in a healthy, forest soil ecosystem. Bacteria are …
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Natural Prodcast Episode 15: Katherine Duncan
Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you … here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … to hear from you. We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … those that are in low abundances—and their functional roles in their community. This study shows how the … cellulases from their captured genomes, the team then used DNA synthesis and cloning, followed by protein in vitro …
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