Results

An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for … data set will help identify how different elements of the ecosystem interact and respond to changes in the … (PNNL). … BioScales project on JGI Genomes Online Database … BioScales project on National Microbiome Data …
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Coral mucus rapidly induces chemokinesis and genome-wide transcriptional shifts toward early pathogenesis in a bacterial coral pathogen
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Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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Transcriptional response of the white-rot fungus Dichomitus squalens to polysaccharides reveals a co-expression network of plant biomass conversion related genes
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of … Laboratory (Berkeley Lab), and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the … genome or MAG and press a button to build a model from our database of mappings between biochemical reactions and …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a … through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as a biofuel. To …
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Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH … viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … the goal of this work is to develop tools, curated databases, and streamlined workflows that allow researchers …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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Introducing New Members of the JGI User Executive Committee
… new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell … priorities.” U’Ren, who studies ecological and evolutionary factors shaping the assembly of fungal endophytes across …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the Novel Metagenome …
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