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Kjiersten Fagnan
Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … Fagnan and M.J. Lijewski. 2012. An Adaptive Mesh Refinement Algorithm for Compressible Two-Phase Flow In Porous Media. … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …
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Game On: High School Students Drive Everglades Metagenomics Study
… is in this soil? Jonathan had been reaching out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  He got … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must be … pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP proposal …
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Exploring Proteomes of Robust Yarrowia lipolytica Isolates Cultivated in Biomass Hydrolysate Reveals Key Processes Impacting Mixed Sugar Utilization, Lipid Accumulation, and Degradation
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome … Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and mentor Juan C. …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … provides new views of these relationships.  Recently , researchers used population genomics to find that while … Archaea, bacteria, and viruses all operate in concert to form the foundation of this deep Earth ecosystem. For …
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Cataloging the Microbes that Manage the Health of River Systems
… watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled … States. They also provided multiple access points to the information. The team harnessed a community-science program to … available, river-focused microbial resource that provides information at multiple scales from genes to the community …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… representatives of deep subsurface ecosystems. A team of researchers described how the viruses repeatedly attempted to … fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. Tolkien’s “The Lord of the Rings,” the Hornburg fortress had withstood all attacks – until the Battle of …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for ‘wanderer’). But they vary … “Prokaryotes are not capable of producing all the juicy proteins and lipids that eukaryotes are.” But according to a … (IPCC) 5th Assessment Report to predict where and how fast the 14° Celsius boundary is moving. “It’s driven by …
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Nigel Mouncey
… genetics that started with his education and carried forward into his roles as a senior research scientist at … World Bio Markets Bio-based Business Person of the Year Publications Committee Chair (2016- ), Society for … Includes: Enhancing spinosyn production with oxygen binding proteins. (2014) U.S. Patent Application US8741603 …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Partners program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … exercise helped us in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal …
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Forming Scientific Connections and Building Community
… experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … JGI brings and being able to be a part of groundbreaking research is very sentimental to me.” Mentors: Crysten … & Bikash Shrestha Project: “ Detecting Isotope Bonds in Proteins. ” Yu Lu : ”I really enjoyed meeting and getting to …
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