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The Surprising Structure of a Shrub Willow Sex Chromosome
… a plant. The Science Sex in plants can be befuddling. Most species are hermaphrodites, expressing both male and female … Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the shrub willows through the  Community Science Program , using long-read sequencing to assemble the repetitive areas …
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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Identifying genomic data use with the Data Citation Explorer
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … host organism. With the virus-host boundary clearly defined using functional annotation methods, it was possible to …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … those those guys that move around or swarm – they might be using secondary metabolites to produce chemicals that would … and you can see that different Frankia have different size genomes depending on what kinds of plants, and what kinds of …
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Cultivating Symbiotic Antarctic Microbes
… cycle. The JGI is sequencing large numbers of microbes and microbial communities that contribute to carbon cycling, and … ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental … the Nha-C cells were interacting with another abundant species in the enrichment cultures,  Hrr. lacusprofundi …
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Webinar: SIP technologies at EMSL and JGI
… Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools … can look at N15 as well as C13 as well as other isotopes using the IRMS. It’s just a matter of what you’re tuned to … don’t have a great way to resolve root respiration from microbial processes, but we’re not mixing the tracer with …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … determine if these fungi act as friends or foes. The Impact Microbial communities comprised of fungi and bacteria can … a mycobiome culture collection consisting of fungal species from natural Arabidopsis populations around Europe. …
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Complete Genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species
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