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UC Merced Interns Reflect on Their JGI Summer Projects
… more about their work here in a series of videos produced by JGI Communications & Outreach intern Ashleigh Papp. The … out the short videos highlighting the exciting work done by the 2020 cohort of JGI-UC Merced interns .   by: Ashleigh Papp … Intern: Harrison Ho (graduate) Mentors: Ian Blaby and Ernst Oberortner Click the image to watch the video …
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Identification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulator
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Characterization of digestate microbial community structure following thermophilic anaerobic digestion with varying levels of green and food wastes
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Development of PCR-based markers for the identification and detection of Lophodermella needle cast pathogens on Pinus contorta var. latifolia and P. flexilis
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… stabilizing the polymerase chain reaction technology that enables researchers to generating thousands to millions of … found in iron-oxide microbial mats. The reddish hues caused by the presence of iron led Inskeep and his colleagues to … The work conducted by the U.S. Department of Energy Joint Genome Institute is …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and … a ssisted  g enome  e ngineering ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 … often fail to express their BGC molecules in the lab. By engineering domesticated close relatives with the BGCs, …
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Jeremy Schmutz
… management for the reference eukaryotic genomes produced by the DOE Joint Genome Institute and the collaborative … 2020. A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci. Nature … Selected Publications …
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Picking Up Threads of Cotton Genomics
… field, growers can easily distinguish the cotton species by traits such as flower color, plant height, or fiber … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton … and marketing company representing upland cotton funded by U.S. growers of upland cotton and importers of cotton and …
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Boosting Small Molecule Production in Super “Soup”
… August 26, 2021, in Nature Communications , researchers led by Hal Alper at The University of Texas at Austin and … to “Soup” The work started with yeast strains engineered by Alper’s team to convert the sugar glucose to the products … where they are partnering with Yasuo Yoshikuni and Ian Blaby of the DNA Synthesis Science Program . “This …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome … Ian Blaby on Google Scholar Grosjean et al ., A hemoprotein with a … 11. 2023 Liu et. al., Bacterial genome editing by coupling Cre-lox and CRISPR-Cas9 systems. PloS one. 15: … Selected Publications …
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Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692T) from the alkaline Lake Magadi in the East African Rift
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Extracting the Secrets of Secondary Metabolites
… in 2019. Now, that power is poised to grow exponentially by combining it with CRISPR.  By employing CRAGE, researchers are no longer limited to … and mutually exclusive lox sites. Ultimately, this process enables researchers to identify strains able to produce …
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