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Boosting Small Molecule Production in Super “Soup”
… (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to make … University describe a two-pronged approach that starts with engineered yeast cells but then moves out of the cell … expression through genetic rewiring with CRISPR-Cas9 that enhanced their ability to redirect the carbon in the cells …
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JGI@25: Strengthening Soybean
… to energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, in crop … doesn’t yield enough gallons of fuel per acre to compete with gasoline. Yet.  In 2010, soybean became the first … helped researchers understand a fungus that threatens these crops as they grow. Asian Soybean Rust is a major problem. …
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A User-Centered Approach to Accessing JGI Data
… Users were previously limited to accessing data sets within groups, such as plants (via Phytozome) or fungi ( … are currently limited to: Public data: datasets associated with completed projects that are eligible for public … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… for the JGI-UC Merced Internship Program was brimming with excitement and determination as they came onsite. From … to science communications, their schedules were filled with trainings that they later reported were incredibly … Andrew Lin and mentor Vy Duong, Understanding Key Genes in Photosynthesis Ravikiran Madichetty and mentors TBK Reddy …
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The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections
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JGI@25: Building a Better Bean
… . “Common beans are a major societal crop for those with severely limited income,” McClean said. “Common bean is … bean has fueled further research into disease tolerance in crops, drought- and stress-resistance as well as nitrogen … fixation; and has enabled discoveries in additional crops such as peanuts, black-eyed peas, soybeans and …
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First Monoploid Reference Sequence of Sugarcane
… of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes (they are … turn limiting the use of modern, genomic breeding in these crops. For diploid species, sequencing programs generally focus on a genotype with two identical sets of chromosomes to produce a …
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Statement on the Use of Genomics Data
… to balance its  Data Release and Utilization Policies with the DOE mandate to provide data access widely to the … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 … by the community regarding the use of JGI data prior to publication by the principal investigators. To resolve these …
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The Earth BioGenome Project 2020: Starting the clock
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Natural Prodcast Episode 7: Ben Shen
… out every two weeks. This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute in … I’ll say up front that JGI recently started collaborating with Ben and his group to work on sequencing, synthesis and … Secondary Metabolome initiative, and our collaboration with Ben is an important part of that. I’m also going to …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like … they can affect how microbes cycle nutrients and adapt to climate change. …
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JGI@25: Using Team Science to Build Communities Around Data
… together over 400 proposal collaborators and co-authors with affiliations at over 180 organizations in 29 U.S. … 85 proposal collaborators, 58 had never shared a proposal with each other prior to their involvement with the 1KFG … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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