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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of … these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley … National Laboratory (Berkeley Lab) marked the visit of an esteemed interdisciplinary delegation from the University … spectroscopic methods in conjunction with microfluidics into a powerful tool to address many of the research …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with the …
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a … site. The chemical PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico … type of food that was in the contaminated aquifer in 2007 to achieve this goal. In less than four years, parts of …
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JGI User Executive Committee Expands
Six new members have been elected to the User Executive Committee (UEC) … Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the Danforth Center, Sundy Maurice of the University of Oslo, …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more complete … single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome … stitch the pieces together and attempt to put them back into the original genomes. These metagenome-assembled …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in many regions … For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting …
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Forming Scientific Connections and Building Community
… pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome … of Science User Facility, hosted three undergraduates and seven graduate students from UC Merced through their … Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein Bendall : …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for … the trees, microbes and soil chemistry offers insights into how these ecosystems cycle nutrients like nitrogen and …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data … picture of a virus, and for viruses that have integrated into the host genome, these sequences may be tainted by the … suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a …
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