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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he … years where he was a driving force behind the development of numerous genomic resources that fostered the widespread … Brachypodium distachyon is a small annual grass that is well …
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Mining metatranscriptomes reveals a vast world of viroid-like circular RNAs
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Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … process called fermentation. To better understand the range of bacteria and archaea that rely on this form of …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … brief history of the field, describe the most commonly used methods, and discuss some of the current challenges faced by … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … become public as well? A:  Currently NEON doesn’t have a method for hosting that data. NEON recommends you host your … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots Over … in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … but we have also pushed the boundaries by applying AI methodologies to unravel their roles,” Pavlopoulos said. …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National … to small individual workshops. Of common interest is the method development to study active sites or single cells in … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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2025 NeLLi Symposium
…   Registration has closed   Registration fees: Regular attendees  (LBNL and …   Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … The NeLLi Symposium will take place at The Marjorie Barrick Museum of Art at the …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video … (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … likely to work well for metabolomics.  Q:  What tool or method is being used to integrate the metabolomics and …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … Various fixation protocols were also tested as part of the method development, and researchers found that ethanol … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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