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Intrinsic and Extrinsic Programming of Product Chain Length and Release Mode in Fungal Collaborating Iterative Polyketide Synthases
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Streamlining Regulon Identification in Bacteria
… transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … genes associated with a given transcription factor is resource-intensive and unscalable. To test the efficacy of … scientist Hiroshi Otani. Both are members of the JGI’s Secondary Metabolite Science Program, which Mouncey leads. …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on … graduate student working with  Susannah Tringe , JGI’s User Programs deputy and head of the Microbial Systems group …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… For bacteria, that salty, slightly stinky air is a rich source of the sulfur they need to grow and divide. Similar to … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … with understanding enabled by Basic Energy Sciences (BES) programs, they were able to multiply the insights that each …
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Fungal Friends or Foes in Plant Roots
… and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … toward filling gaps on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled …
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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A Standardized Synthetic Eucalyptus Transcription Factor and Promoter Panel for Re-engineering Secondary Cell Wall Regulation in Biomass and Bioenergy Crops
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… may have been important in early Earth conditions. The Science Through a combination of sequencing tools and … and direct microscopy. Through the JGI’s Community Science Program , the team used metagenome assemblies, … Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The meeting was a hybrid event, … made possible by CRISPR-Cas9; the Weizmann Institute of Science’s Assaf Vardi, who delved into algae blooms and the … form these blooms, all the way to individual cells, and the metabolites, vesicles, and virions they produce. To …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… talk and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your science. …
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MAGI: A Method for Metabolite Annotation and Gene Integration
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked … step, numerous genes for antibiotic resistance and secondary metabolism would have been incorrectly attributed …
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