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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… synthesis superpower. Through a series of case studies, JGI scientific users share how they’ve worked with the JGI DNA … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … Transcriptional control of  Clostridium autoethanogenum  using CRISPRi ). Now, they’ll be able to further explore how …
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Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes
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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
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Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
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Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12
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The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies
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Phenotypic and genomic signatures of interspecies cooperation and conflict in naturally occurring isolates of a model plant symbiont
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The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum
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FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar
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I-Min (Amy) Chen
… has been focused on semantic and object-oriented data modeling, and biological data management. She was one of the … the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. Chen … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Uncovering Novel Genomes from Earth’s Microbiomes
… laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and characterizing … not already been associated with a host – with 23,000 MAGs. Modeling A New Path for Metagenomics Researchers Building … work also used resources of the  National Energy Research Scientific Computing Center (NERSC) , another DOE Office of …
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Metabolomics Program
… in your custom Python applications but highly recommend using the workflow in  GNPS2 .   … In support of user … profiles from diverse biological and environmental samples using advanced liquid chromatography mass spectrometry …
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